SnapHiC的环境安装

git clone https@github.com:HuMingLab/SnapHiC.git

cd SnapHiC/

micromamba create -n 10_snaphic_env   -c https://repo.anaconda.com/pkgs/main   -c https://repo.anaconda.com/pkgs/r   python=3.6.8

micromamba activate 10_snaphic_env

# 推荐直接装 conda 版本，不走编译流程
micromamba install conda-forge::openmpi-mpicc mpi4py==3.0.3

micromamba install -c https://conda.anaconda.org/conda-forge libxcrypt cytoolz cython
# export CPATH=/public/home/hpc******/micromamba/envs/10_snaphic_env/include

micromamba install numpy=1.19.1 scipy=1.5.0 statsmodels=0.11.1 pandas=0.24.2 scikit-image=0.16.2 networkx=2.4 h5py=2.8.0

micromamba install bioconda::cooler=0.8.10



pip install -r requirements.txt

python -m pip install --user cython
python -m pip install --user cytoolz
python -m pip install --user eth-brownie

可能会遇到的报错：
https://github.com/stanford-futuredata/ColBERT/issues/309

https://stackoverflow.com/questions/69875694/pip-failed-to-build-package-cytoolz