fMRIPrep

Setup Environment

Case 1 : Use Docker 

Step1 Install Docker 

apt-get install docker.io -y
apt-get install docker-compose -y

Add user which can execute docker 

sudo usermod -aG docker ${USER}

Pull Docker images

docker pull nipreps/fmriprep:20.2.2
docker pull nipreps/fmriprep:latest

Method to process data 

fmriprep-docker /path/to/data/dir /path/to/output/dir participant
RUNNING: docker run --rm -it -v /path/to/data/dir:/data:ro \
    -v /path/to_output/dir:/out nipreps/fmriprep:20.2.2 \
    /data /out participant

　　

 

Refer : 

https://www.nipreps.org/apps/docker/#running-a-niprep-with-a-lightweight-wrapper

https://fmriprep.org/en/stable/