from pyspark import SparkContext, SQLContext
from pyspark.ml import Pipeline
from pyspark.ml.classification import DecisionTreeClassifier
from pyspark.ml.feature import StringIndexer, VectorIndexer
from pyspark.ml.evaluation import MulticlassClassificationEvaluator
# Load the data stored in LIBSVM format as a DataFrame.
data = sqlContext.read.format("libsvm").load("data/mllib/sample_libsvm_data.txt")
# Index labels, adding metadata to the label column.
# Fit on whole dataset to include all labels in index.
labelIndexer = StringIndexer(inputCol="label", outputCol="indexedLabel").fit(data)
# Automatically identify categorical features, and index them.
# We specify maxCategories so features with > 4 distinct values are treated as continuous.
featureIndexer =\
VectorIndexer(inputCol="features", outputCol="indexedFeatures", maxCategories=4).fit(data)
# Split the data into training and test sets (30% held out for testing)
(trainingData, testData) = data.randomSplit([0.7, 0.3])
# Train a DecisionTree model.
dt = DecisionTreeClassifier(labelCol="indexedLabel", featuresCol="indexedFeatures")
# Chain indexers and tree in a Pipeline
pipeline = Pipeline(stages=[labelIndexer, featureIndexer, dt])
# Train model. This also runs the indexers.
model = pipeline.fit(trainingData)
# Make predictions.
predictions = model.transform(testData)
# Select example rows to display.
predictions.select("prediction", "indexedLabel", "features").show(5)
# Select (prediction, true label) and compute test error
evaluator = MulticlassClassificationEvaluator(
labelCol="indexedLabel", predictionCol="prediction", metricName="precision")
accuracy = evaluator.evaluate(predictions)
print("Test Error = %g " % (1.0 - accuracy))
treeModel = model.stages[2]
# summary only
print(treeModel)
#############################
from pyspark.ml.tuning import ParamGridBuilder, CrossValidator
# Create ParamGrid for Cross Validation
paramGrid = (ParamGridBuilder()
.addGrid(lr.regParam, [0.01, 0.5, 2.0])
.addGrid(lr.elasticNetParam, [0.0, 0.5, 1.0])
.addGrid(lr.maxIter, [1, 5, 10])
.build())
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# Create 5-fold CrossValidator
cv = CrossValidator(estimator=lr, estimatorParamMaps=paramGrid, evaluator=evaluator, numFolds=5)
# Run cross validations
cvModel = cv.fit(trainingData)
# this will likely take a fair amount of time because of the amount of models that we're creating and testing
# Use test set here so we can measure the accuracy of our model on new data
predictions = cvModel.transform(testData)
# cvModel uses the best model found from the Cross Validation
# Evaluate best model
evaluator.evaluate(predictions)
#We can also access the model’s feature weights and intercepts easily
print 'Model Intercept: ', cvModel.bestModel.intercept
ML provides CrossValidator class which can be used to perform cross-validation and parameter search. Assuming your data is already preprocessed you can add cross-validation as follows:
import org.apache.spark.ml.Pipeline
import org.apache.spark.ml.tuning.{ParamGridBuilder, CrossValidator}
import org.apache.spark.ml.classification.RandomForestClassifier
import org.apache.spark.ml.evaluation.MulticlassClassificationEvaluator
// [label: double, features: vector]
trainingData org.apache.spark.sql.DataFrame = ???
val nFolds: Int = ???
val NumTrees: Int = ???
val metric: String = ???
val rf = new RandomForestClassifier()
.setLabelCol("label")
.setFeaturesCol("features")
.setNumTrees(NumTrees)
val pipeline = new Pipeline().setStages(Array(rf))
val paramGrid = new ParamGridBuilder().build() // No parameter search
val evaluator = new MulticlassClassificationEvaluator()
.setLabelCol("label")
.setPredictionCol("prediction")
// "f1" (default), "weightedPrecision", "weightedRecall", "accuracy"
.setMetricName(metric)
val cv = new CrossValidator()
// ml.Pipeline with ml.classification.RandomForestClassifier
.setEstimator(pipeline)
// ml.evaluation.MulticlassClassificationEvaluator
.setEvaluator(evaluator)
.setEstimatorParamMaps(paramGrid)
.setNumFolds(nFolds)
val model = cv.fit(trainingData) // trainingData: DataFrame
Using PySpark:
from pyspark.ml import Pipeline
from pyspark.ml.classification import RandomForestClassifier
from pyspark.ml.tuning import CrossValidator, ParamGridBuilder
from pyspark.ml.evaluation import MulticlassClassificationEvaluator
trainingData = ... # DataFrame[label: double, features: vector]
numFolds = ... # Integer
rf = RandomForestClassifier(labelCol="label", featuresCol="features")
evaluator = MulticlassClassificationEvaluator() # + other params as in Scala
pipeline = Pipeline(stages=[rf])
crossval = CrossValidator(
estimator=pipeline,
estimatorParamMaps=paramGrid,
evaluator=evaluator,
numFolds=numFolds)
model = crossval.fit(trainingData)