[转载]RNA序列数据库

2. RNA Sequence, Structure and Functions
16S and 23S rRNA Mutation Database	16S and 23S ribosomal RNA mutations	http://ribosome.fandm.edu
3D rRNA modification maps	Locations of modified rRNA nucleotides within the 3D structure of the ribosome	http://people.biochem.umass.edu/fournierlab/3dmodmap/
5S rRNA Database	5S rRNA sequences	http://biobases.ibch.poznan.pl/5SData/
Aptamer Database	Small RNA/DNA molecules binding nucleic acids, proteins	http://aptamer.icmb.utexas.edu
ARED	AU-rich element-containing mRNAs	http://brp.kfshrc.edu.sa/ARED
Argonaute	Gene regulation by mammalian microRNAs	http://argonaute.uni-hd.de
dbRES	Database of known RNA editing sites	http://bioinfo.au.tsinghua.edu.cn/dbRES/
European rRNA DB	All complete or nearly complete rRNA sequences	http://www.psb.ugent.be/rRNA/
fRNAdb	Functional RNA Database: noncoding transcripts that affect gene expression	http://www.ncrna.org/
Greengenes	Multiple sequence alignment of prokaryotic 16S rDNA	http://greengenes.llnl.gov/16S/
GRSDB	G-rich sequences database	http://bioinformatics.ramapo.edu/GRSDB2/
G-tRNA-db	Genomic tRNA Database	http://lowelab.ucsc.edu/GtRNAdb/
Guide RNA Database		No longer maintained
HIV Sequence DB	HIV RNA sequences	http://hiv-web.lanl.gov/
HuSiDa	Human siRNA database	http://itb.biologie.hu-berlin.de/~nebulus/sirna/index.htm
HyPaLib	Hybrid pattern library: structural elements in classes of RNA	Not actively maintained
IRESdb -	the Internal Ribosome Entry Site database	http://ifr31w3.toulouse.inserm.fr/IRESdatabase/
IRESite	Experimentally studied internal ribosome entry sites	http://www.iresite.org
MeRNA	Metal ion binding sites in RNA	http://merna.lbl.gov
microRNA.org	microRNA target predictions and expression profiles	http://www.microrna.org
miRBase	MicroRNA sequences, names, and predicted targets in animals	http://microrna.sanger.ac.uk/sequences/
miRGator	microRNA target prediction, functional analysis, and gene expression data	http://genome.ewha.ac.kr/miRGator/miRGator.html
miRGen	Animal microRNAs located in introns, exons, UTRs, pseudogenes and CpG islands	http://www.diana.pcbi.upenn.edu/miRGen
miRNAMap	microRNA precursors and their mapping to targets in vertebrate genomes	http://mirnamap.mbc.nctu.edu.tw
Mobile group II introns	Database for mobile group II introns	http://www.fp.ucalgary.ca/group2introns/
MODOMICS	Database of RNA modification pathways	http://genesilico.pl/modomics/
NATsDB	Natural Antisense Transcripts database	http://nats.cbi.pku.edu.cn
NCIR	Non-Canonical Interactions in RNA	http://prion.bchs.uh.edu/bp_type/
ncRNAs database	Non-coding RNAs with regulatory functions	http://biobases.ibch.poznan.pl/ncRNA/
NONCODE	Database of noncoding RNAs	http://bioinfo.ibp.ac.cn/NONCODE/index.htm
NPInter	Noncoding RNA-protein interactions	http://bioinfo.ibp.ac.cn/NPInter/index.php
piRNABank	Sequences and properties of Piwi-interacting RNAs (piRNAs) in human, mouse and rat	http://pirnabank.ibab.ac.in/
Plant snoRNA DB	snoRNA genes in plant species	http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/home
PLANTncRNAs		No longer maintained
PLMItRNA	Mitochondrial tRNA genes in photosynthetic eukaryotes	http://bighost.area.ba.cnr.it/PLMItRNA/
PolyA_DB	Database of mammalian mRNA polyadenylation	http://polya.umdnj.edu/
PseudoBase	Database of RNA pseudoknots	http://wwwbio.leidenuniv.nl/~Batenburg/PKB.html
REDIdb	An RNA editing database	http://biologia.unical.it/py_script/search.html
Rfam	Non-coding RNA families	http://www.sanger.ac.uk/Software/Rfam/
RDP-II	Ribosomal Database Project	http://rdpNaNe.msu.edu
RISSC	Ribosomal Internal Spacer Sequence Collection	http://egg.umh.es/rissc
RNA Modification DB	Naturally modified nucleosides in RNA	http://medlib.med.utah.edu/RNAmods/
RNA SSTRAND	RNA secondary structure data and structural motifs	http://www.rnasoft.ca/sstrand
RNAdb	Mammalian noncoding RNA database	http://ncrna.bioinformatics.com.au
RNAi codex	Clones from mouse, human and rat shRNA libraries	http://codex.cshl.org
siRecords	Experimentally tested mammalian siRNAs	http://sirecords.umn.edu/siRecords/
siRNAdb	Functional human siRNA sequences	http://sirna.cgb.ki.se
Small RNA Database		No longer maintained
snoRNA-LBME-db	Human snoRNAs and Cajal body-specific RNAs (scaRNAs)	http://www-snorna.biotoul.fr/
Sno/scaRNAbase	Small nucleolar RNAs and cajal body-specific RNAs	http://gene.fudan.sh.cn/snoRNAbase.nsf
SRPDB	Signal recognition particle database	http://rnp.uthct.edu/rnp/SRPDB/SRPDB.html
Subviral RNA DB	Database of viroids and viroid-like RNAs	http://subviral.med.uottawa.ca/
The Small Subunit rRNA Modification DB	Modified nucleosides in small subunit rRNA	http://library.med.utah.edu/SSUmods/
tmRDB	tmRNA database	http://rnp.uthct.edu/rnp/tmRDB/tmRDB.html
tmRNA Website	tmRNA sequences and alignments	http://www.indiana.edu/~tmrna
tRNA Sequences		Has not been updated
Vir-Mir db	Prediction of viral microRNA candidate hairpins	http://alk.ibms.sinica.edu.tw
Yeast snoRNA Database	Yeast small nucleolar RNAs	http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html

 

本文引用地址：http://blog.sciencenet.cn/blog-748683-886124.html  此文来自科学网潘兴亮博客，转载请注明出处。