坐山雕

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02 2021 档案

怎样去掉word中的换行符
摘要:word --> reference --> view --> Show non-Printing Characters --> All --> un-select 阅读全文

posted @ 2021-02-19 17:39 坐山雕 阅读(176) 评论(0) 推荐(0)

warning [escuelaslinux6.12-english-64bits.zip]: zipfile claims to be last disk of a multi-part archive;
摘要:simon@ZhengmzLAB:/media/simon/HDD5$ unzip escuelaslinux6.12-english-64bits.zip Archive: escuelaslinux6.12-english-64bits.zip warning [escuelaslinux6.1 阅读全文

posted @ 2021-02-17 20:09 坐山雕 阅读(1016) 评论(0) 推荐(0)

语音识别: DeepSpeech2
摘要:https://github.com/PaddlePaddle/DeepSpeech/blob/develop/README_cn.md http://proceedings.mlr.press/v48/amodei16.pdf 阅读全文

posted @ 2021-02-17 16:41 坐山雕 阅读(787) 评论(0) 推荐(0)

RNA-seq
摘要:STAR 处理后的RNA-seq数据 BAM和bedgraph 在q30和picard后上传的效果一样 scRNAseq也需要split R2上传 阅读全文

posted @ 2021-02-16 15:04 坐山雕 阅读(253) 评论(0) 推荐(0)

BASIC get track name
摘要:/usr/local/BASIC/_py/bin/python /usr/local/BASIC/basic/console/track_util.py list|grep $F 阅读全文

posted @ 2021-02-16 11:36 坐山雕 阅读(54) 评论(0) 推荐(0)

修改 bam 文件中染色体名 add chr
摘要:$1=xxx.bam $2=xxx.chr.bam samtools view -H $1 | sed -e 's/SN:/SN:chr/g' | samtools reheader - $1 > $2 阅读全文

posted @ 2021-02-15 20:24 坐山雕 阅读(947) 评论(0) 推荐(0)

conda tophat STAR
摘要:conda create -n tophat python = 2.7 conda install -c bioconda tophat conda install bowtie2 http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml#the- 阅读全文

posted @ 2021-02-15 11:12 坐山雕 阅读(125) 评论(0) 推荐(0)

STARsolo
摘要:you can concatenate the files, or supply them as two (for Read2(barcode) and Read1(cDNA)) comma-separated lists, i.e. Hi Olga, I have finally finished 阅读全文

posted @ 2021-02-14 21:24 坐山雕 阅读(360) 评论(0) 推荐(0)

picard
摘要:https://gatk.broadinstitute.org/hc/en-us/articles/360037225972-MarkDuplicates-Picard- 阅读全文

posted @ 2021-02-14 19:46 坐山雕 阅读(45) 评论(0) 推荐(0)

STAR
摘要:https://github.com/alexdobin/STAR/issues/175 阅读全文

posted @ 2021-02-13 13:10 坐山雕 阅读(31) 评论(0) 推荐(0)

SRR1957059
摘要:https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR1957059 https://www.ncbi.nlm.nih.gov/sra?term=SRX982548 https://www.ncbi.nlm.nih.gov/geo/query/acc.c 阅读全文

posted @ 2021-02-09 15:53 坐山雕 阅读(74) 评论(0) 推荐(0)

shinyapps.io publish
摘要:https://docs.rstudio.com/shinyapps.io/getting-started.html#installation 阅读全文

posted @ 2021-02-09 15:02 坐山雕 阅读(71) 评论(0) 推荐(0)

A Helpful Way to Install R Packages Hosted on GitHub
摘要:https://cran.r-project.org/web/packages/githubinstall/vignettes/githubinstall.html 阅读全文

posted @ 2021-02-09 12:16 坐山雕 阅读(45) 评论(0) 推荐(0)

Combine part of a PDF with another PDF in preview in mac
摘要:Combine part of a PDF with another PDF Open the PDFs that you want to combine in Preview. In each document, choose View > Thumbnails to show page thum 阅读全文

posted @ 2021-02-08 11:14 坐山雕 阅读(54) 评论(0) 推荐(0)

sshfs mac
摘要:brew install --cask osxfuse brew install sshfs mkdir HDD6 sshfs -p 1911 simon@10.20.1.138:/media/simon/HDD6 HDD6 阅读全文

posted @ 2021-02-03 10:41 坐山雕 阅读(75) 评论(0) 推荐(0)

rsync+ssh同步备份文件
摘要:jakqigle 2015-06-13 22:50:50 3532 收藏 分类专栏: Linux Software&Tools 文章标签: rsync ssh 版权 定期对web代码或重要的文件做同步异地服务器备份,防止服务器故障严重磁盘损坏时文件丢失的问题。 备份服务器:192.168.200.1 阅读全文

posted @ 2021-02-02 15:28 坐山雕 阅读(140) 评论(0) 推荐(0)

mouse click shiny
摘要:library(ggplot2) ui <- basicPage( plotOutput("plot1", click = "plot_click"), verbatimTextOutput("info") ) server <- function(input, output) { output$p 阅读全文

posted @ 2021-02-01 16:59 坐山雕 阅读(55) 评论(0) 推荐(0)

ggplot log2
摘要:PSELC+ scale_y_continuous(trans = log2_trans()) 阅读全文

posted @ 2021-02-01 11:47 坐山雕 阅读(53) 评论(0) 推荐(0)

R语言可视化学习笔记之ggridges包. crossed coverage
摘要:https://blog.csdn.net/woodcorpse/article/details/106554057 library(viridis) library(ggridges) head(lincoln_weather[ ,1:4]) ggplot(lincoln_weather, aes 阅读全文

posted @ 2021-02-01 11:04 坐山雕 阅读(238) 评论(1) 推荐(0)

white no line rectGrob
摘要:rectGrob(gp=gpar(fill=NA,col=NA)), #Plot Footer my_g1 ← grobTree(rectGrob(gp=gpar(fill="#F0F0F0",col=NA)), linesGrob(unit(c(.05, .95), "npc"), unit(1, 阅读全文

posted @ 2021-02-01 10:29 坐山雕 阅读(59) 评论(0) 推荐(0)