Damfilt

Damfilt is a program that filters an averaged model as created by damaver at a given cut-off volume. Given the frequency map computed by damaver and the value of a cut-off volume, damfilt removes low occupancy and loosely connected atoms and writes a compact - most probable - model into the output file damfilt.pdb . The output volume is selected to be close to the cut-off volume (expected excluded volume of the particle). This value is either read from the input file (default file name is damaver.pdb) or prompted interactively.

Running damfilt

$> damfilt [[INPUTFILE] [OPTIONS]]