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Expression Connection

Expression Connection allows you to search gene expression data from multiple microarray studies.

Search I: Find the expression of one or more genes in one or more datasets.

Search II: Find datasets where the expression of one or more genes changes by an amount you define.

Search III: Find all genes that change expression in a manner you define in one or more datasets (eg. increase by 10-fold).

Webminer: Search microarray datasets on an experiment by experiment basis

Other Resources: Go to websites outside of SGD.

Search I: Find the expression of one or more genes in one or more datasets.

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Step 1. Specify gene name(s):

Enter gene name(s) separated by "Return":

OR

Select TEXT file with list of ORF or gene names, one per line. WORD Documents do not work unless saved as TEXT:

Step 2. Select datasets you wish to query:

Evolution of expression during glucose limitation, Stanford University	Ferea TL, et al.
Exploration of essential gene functions via titratable promoter alleles, University of Toronto	Mnaimneh S, et al.
Expression analysis of snf/swi mutants, Harvard University, Stanford University	Sudarsanam P, et al.
Expression during sporulation, UCSF, Stanford University	Chu S, et al.
Expression during the cell cycle, Stanford University, Cold Spring Harbor	Spellman PT, et al. The analysis in Spellman et al included data from Cho et al
Expression during the diauxic shift, Stanford University	DeRisi JL, et al.
Expression during the unfolded protein response, UCSF	Travers KJ, et al.
Expression in response to DNA-damaging agents, Stanford University	Gasch AP, et al.
Expression in response to alpha-factor (over time), Rosetta Inpharmatics	Roberts CJ, et al.
Expression in response to alpha-factor (various concentrations), Rosetta Inpharmatics	Roberts CJ, et al.
Expression in response to arsenic (time and dose), NIEHS (NIH), UCSD, Stanford University	Haugen AC, et al.
Expression in response to environmental changes, Stanford University	Gasch AP, et al.
Expression in response to histone depletion, Stanford University	Wyrick JJ, et al.
Expression in response to varying zinc levels, University of Missouri, Stanford University	Lyons TJ, et al.
Expression in the presence of small-molecule inhibitors of rapamycin (SMIRs), Harvard, Yale, UCLA	Huang J, et al.
Expression regulated by the PHO pathway, Stanford University	Ogawa N, et al.
Expression regulated by the calcineurin/Crz1 pathway, Stanford	Yoshimoto H, et al.
Gene regulation by HTZ1, SWR1 and SIR2, UCSF	Meneghini MD, et al. Kobor MS, et al.
Gene regulation by Ino80 and Arp8, FMI, Basel, Switzerland	van Attikum H, et al.
Gene regulation by Ino80 and Arp8 in response to MMS, FMI, Basel, Switzerland	van Attikum H, et al.
Gene regulation by Swr1, Htz1, and Ino80, National Cancer Institute	Mizuguchi G, et al.
Ploidy regulation of gene expression, Whitehead, MIT	Galitski T, et al.
Role of transcription factors in adaptation to arsenic-induced stress, NIEHS (NIH), UCSD, Stanford University	Haugen AC, et al.
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