DBA results

PromoterWise

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PromoterWise Results
Output file	promoterwise-20040802-17235964487297.output
First input file	promoterwise-20040802-17235964487297.input.1
Second input file	promoterwise-20040802-17235964487297.input.2

BLASTP 2.1.2


Reference: Wise2 Package, Ewan Birney
BLAST like format to play well with existing parsers. Other options are available
See help on the program that generated this for other options


Query= Not specified


Search.................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value
      Promoter:                                               10.64    0
      Promoter:                                               9.59    0
      Promoter:                                               8.09    0
      Promoter:                                               11.37    0
      Promoter:                                               11.37    0
      Promoter:                                               33.83    0
      Promoter:                                               13.16    0
      Promoter:                                               9.71    0
      Promoter:                                               10.90    0

>Promoter:
          Length = 2100 Reversed 1

 Score = 10.6 bits (3687), Expect = 0

Query:      170     CCA-CTAAATGCA                                     181  
                 D  CCA CTAAATGCA                                          
Sbjct:      -1998   CCATCTAAATGCA                                     -1985



>Promoter:
          Length = 2100 Reversed 1

 Score = 9.6 bits (3322), Expect = 0

Query:      212     TTCATTCAT                                         220  
                 D  TTCATTCAT                                              
Sbjct:      -1265   TTCATTCAT                                         -1256



>Promoter:
          Length = 2100 Reversed 1

 Score = 8.1 bits (2803), Expect = 0

Query:      1299    AGCTCAACCCCAGT                                    1312 
                 C  AGCTCAA CC AGT                                         
Sbjct:      -1953   AGCTCAAGCCAAGT                                    -1939



>Promoter:
          Length = 2100 Reversed 1

 Score = 11.4 bits (3941), Expect = 0

Query:      1546    GAGAGAGAGA                                        1555 
                 D  GAGAGAGAGA                                             
Sbjct:      -1289   GAGAGAGAGA                                        -1279



>Promoter:
          Length = 2100 Reversed 1

 Score = 11.4 bits (3941), Expect = 0

Query:      1594    TCCAAAGGCC                                        1603 
                 D  TCCAAAGGCC                                             
Sbjct:      -295    TCCAAAGGCC                                        -285 



>Promoter:
          Length = 2100 Reversed 0

 Score = 33.8 bits (11725), Expect = 0

Query:      1664    TGCCTGCCTGTCTTCTTGCCTGTGAGATCCTGAAACTTGCTCATTGCTG 1712 
                 B  TGCCTGCCT    TCT G CTGTGAG TC TGAAAC TG  CATTGCTG      
Sbjct:      446     TGCCTGCCTCCAGTCTCGTCTGTGAGGTCTTGAAACATGTCCATTGCTG 494  


Query:      1713    AAA                                               1715 
                 B  AAA                                                    
Sbjct:      495     AAA                                               497  



>Promoter:
          Length = 2100 Reversed 1

 Score = 13.2 bits (4560), Expect = 0

Query:      1746    AGATTCGGAGA                                       1756 
                 D  AGATTCGGAGA                                            
Sbjct:      -966    AGATTCGGAGA                                       -955 



>Promoter:
          Length = 2100 Reversed 1

 Score = 9.7 bits (3366), Expect = 0

Query:      1924    TCTTCCCTCCCGGCC                                   1938 
                 C  TC TCCCTCCC GCC                                        
Sbjct:      -1940   TCCTCCCTCCCAGCC                                   -1925



>Promoter:
          Length = 2100 Reversed 0

 Score = 10.9 bits (3777), Expect = 0

Query:      2047    CCCTGGGTCCGCC                                     2059 
                 D  CCCTGGG CCGCC                                          
Sbjct:      1196    CCCTGGGACCGCC                                     1208